Receptor tyrosine kinase, Tumor resistance, Inhibitor activity assessment, Random forest, MDBO-RF
," /> Receptor tyrosine kinase, Tumor resistance, Inhibitor activity assessment, Random forest, MDBO-RF
,"/> Receptor tyrosine kinase, Tumor resistance, Inhibitor activity assessment, Random forest, MDBO-RF,"/> An Improved Machine Learning Model for Screening and Activity Prediction of Receptor Tyrosine Kinase

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Journal of Bionic Engineering ›› 2026, Vol. 23 ›› Issue (1): 488-523.doi: 10.1007/s42235-025-00816-3

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An Improved Machine Learning Model for Screening and Activity Prediction of Receptor Tyrosine Kinase

Huanghui Xia1,2, Huangzhi Xia3,4, Jianzhong Huang1,2   

  1. 1 College of Life Sciences, Fujian Normal University, No. 8Xuefu South Road, Shangjie Town, Minhou County,Fuzhou 350117, People’s Republic of China
    2 National and Local United Engineering Research Centerof Industrial Microbiology and Fermentation Technology,Fujian Normal University, No. 8 Xuefu South Road, ShangjieTown, Minhou County, Fuzhou350117, People’s Republic of China
    3 School of Mathematics and Statistics, Fujian NormalUniversity, No. 8 Xuefu South Road, Shangjie Town,Minhou County, Fuzhou 350117, People’s Republic of China
    4 Key Laboratory of Analytical Mathematics and Applicationsof Ministry of Education, Fujian Normal University, No. 8Xuefu South Road, Shangjie Town, Minhou County,Fuzhou 350117, People’s Republic of China
  • Online:2026-02-15 Published:2026-03-17
  • Contact: Huangzhi Xia3,4, Jianzhong Huang1,2 E-mail:xiahuangzhi_math@126.com, hjz@fjnu.edu.cn
  • About author:Huanghui Xia1,2, Huangzhi Xia3,4, Jianzhong Huang1,2

Abstract: Aberrant activation of Receptor Tyrosine Kinases (RTKs) is a well-established trigger of tumorigenesis, and the overuse of RTK inhibitors often leads to drug resistance and tumor recurrence. While current Drug-Target Interaction (DTI)prediction methods (including those based on heterogeneous information networks) have shown promise, they remainlimited in their ability to fully capture the nature of DTIs and often lack interpretability. To overcome these limitations,this study introduces a novel hybrid optimization model termed MDBO-RF, which integrates a Modified Dung BeetleOptimizer (MDBO) with Random Forest (RF). The key innovation lies in the enhancement of the DBO algorithm througha quaternion-based learning mechanism and the Cauchy mutation strategy, specifically designed to overcome the slowconvergence and susceptibility to local optima that plague traditional metaheuristic algorithms used for hyperparametertuning. The model leverages commonly used molecular descriptors to enhance the prediction of Tyrosine Kinase (TK)inhibitory activity and enable efficient compound screening. Our results demonstrate that MDBO-RF achieves a 3.41%increase in prediction accuracy compared to the standard RF model and outperforms several other contemporary machinelearning approaches. The model effectively streamlines the RTK inhibitor screening process by improving predictionaccuracy in multi-target competitive binding scenarios and reducing false-positive screening due to off-target effects. Thiswork underscores the value of hybrid optimization strategies in bioinformatics and provides a robust, interpretable toolfor accelerating drug discovery.

Key words: Receptor tyrosine kinase, Tumor resistance, Inhibitor activity assessment, Random forest, MDBO-RF')">Receptor tyrosine kinase, Tumor resistance, Inhibitor activity assessment, Random forest, MDBO-RF